FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020250

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020250
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9363277
Sequences flagged as poor quality0
Sequence length0-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGATCCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATGCAA315200.33663427878935975No Hit
GGCGGATGCCTTGGCTCTCGGAGGCGATGAAGGACGTGATAAGCTGCGAT230330.24599293602015618No Hit
GTGAAATAGAACCTGAAACCGTGTGCCTACAACCGCTCAGAGCCCCTTAT167030.17838839970236917No Hit
GCCACATACTTTGAGCTCGGCAGTCAGACTACGAATGATAAGATCCGTGG137780.14714933671192254No Hit
GTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCTTAACACATGCAA123760.13217594651957856No Hit
GTCGTACCGTAAGGAGCGGTGGACTGGTTACGAGTGAGAATGTTGGCATC115280.12311928825773284No Hit
GAGCGTCGTAACCGGGCTGAAGTCGTACCGTAAGGAGCGGTGGACTGGTT111870.11947740091423122No Hit
CATACTTTGAGCTCGGCAGTCAGACTACGAATGATAAGATCCGTGGTCAA110380.11788607770548709No Hit
GGTGAATGCCTTGGCATCAGGAGCCGATGAAGGACGTGATAAGCTGCGAT107520.11483159154642121No Hit
CCAGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGTGTAG105020.11216158616262234No Hit
104420.11152078487051062No Hit
GACCGAACCACGTTGCTGTTGAAAAAGCATGGGATGAGCTGTGGATAGCG98530.10523025218628052No Hit
CACATACTTTGAGCTCGGCAGTCAGACTACGAATGATAAGATCCGTGGTC96920.10351076871911405No Hit
AATGACGGTACCCAAGGAGGAAGCCACGGCTAACTACGTGCCAGCAGCCG93870.10025336215087945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)