FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020251

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020251
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7780209
Sequences flagged as poor quality0
Sequence length0-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACTCC411630.5290731907073447No Hit
CCCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACCA250280.32168801635020344No Hit
CCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACCAC158130.20324646805760616No Hit
GTCCCGACTAACCCTCAGCGGACGAACCTTCCTGAGGAAACCTTAGGTTT143430.18435237408146746No Hit
CCTCGATCTATTAGTATCGGTCAGCTGAACATGTTACCATGCTTACACCC142830.18358118657223732No Hit
CCCCGGAGTACCTTTTATCCTTTGAGCGATGTCCCTTCCATACGGAAACA139480.17927538964570233No Hit
CCCGTAGCTTCGGTGGTAAGTTTAGCCCCGTTACATTTTCGGCGCAAGAT129800.1668335644967892No Hit
CGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACTCCA125410.1611910425542553No Hit
CCCGACTAACCCTCAGCGGACGAACCTTCCTGAGGAAACCTTAGGTTTTC111930.1438650298468846No Hit
CCCCATTGTAACACGTGTGTAGCCCCGGACGTAAGGGCCGTGCTGATTTG105600.1357290016245065No Hit
CCTCGCTTCAACCTGGCCATGGATAGGTCACCCGGTTTCGGGTCTACGGC101160.13002221405620337No Hit
CTTAACTGTAATTCTTCCGCCGGCCTTAGGATTCTCTCCTCACCTACCTG99440.1278114765297436No Hit
90440.11624366389129134No Hit
CCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAATGT87810.11286329197583253No Hit
CCCCGTTACATTTTCGGCGCAAGATCTCTCGACTAGTGAGCTATTACGCA87500.11246484509606362No Hit
GCTCCCCACGCTTTCGAGCCTCAGCGTCAGTTACAGTCCAGAGAGTCGCC86980.11179648258806416No Hit
GCTCCCTTTAAACCCAATAAATCCGGATAACGCTCGGATCCTCCGTATTA86010.11054972944814208No Hit
CCTACATTTGCTTTTCCACACGCTCCAGCAAAGCTCACGCTTCACCTTCG84300.10835184504683615No Hit
GTTCGCTATCGGTCTCTCGGGAGTATTTAGCCTTACCGGATGGTCCCGGC80650.10366045436568606No Hit
GCCCATTCAGTGCTCTACCTCCACTACTCATACTCGACGCTAGCCCTAAA80210.10309491685891728No Hit
GCCCGACTTTCGTCCCTGCTCCACTTGTGGGTGTCGCAGTCAGGCTCCCT80000.10282500123068675No Hit
GGTAAGTTTAGCCCCGTTACATTTTCGGCGCAAGATCTCTCGACTAGTGA78870.10137259808830329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)