FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020252

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020252
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7780209
Sequences flagged as poor quality0
Sequence length0-101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTTGATCCTGGCTCAGGATGAACGCTAGCTACAGGCTTAACACATGCAA263340.33847419780111304No Hit
GGCGGATGCCTTGGCTCTCGGAGGCGATGAAGGACGTGATAAGCTGCGAT193910.24923494985803082No Hit
GTGAAATAGAACCTGAAACCGTGTGCCTACAACCGCTCAGAGCCCCTTAT139190.1789026490162411No Hit
GCCACATACTTTGAGCTCGGCAGTCAGACTACGAATGATAAGATCCGTGG120090.15435317997241463No Hit
GTTTGATCCTGGCTCAGGATGAACGCTGGCGGCGTGCTTAACACATGCAA105290.13533055474473757No Hit
GTCGTACCGTAAGGAGCGGTGGACTGGTTACGAGTGAGAATGTTGGCATC97700.12557503275297616No Hit
GAGCGTCGTAACCGGGCTGAAGTCGTACCGTAAGGAGCGGTGGACTGGTT94040.12087078894667226No Hit
CATACTTTGAGCTCGGCAGTCAGACTACGAATGATAAGATCCGTGGTCAA93710.12044663581659568No Hit
90530.11635934201767587No Hit
CCAGGAGGAAGGTGGGGATGACGTCAAATCATCATGCCCCTTATGTGTAG89740.11534394513052285No Hit
GGTGAATGCCTTGGCATCAGGAGCCGATGAAGGACGTGATAAGCTGCGAT87370.11229775446906375No Hit
GACCGAACCACGTTGCTGTTGAAAAAGCATGGGATGAGCTGTGGATAGCG84970.10921300443214314No Hit
CACATACTTTGAGCTCGGCAGTCAGACTACGAATGATAAGATCCGTGGTC80760.10380183874237826No Hit
AATGACGGTACCCAAGGAGGAAGCCACGGCTAACTACGTGCCAGCAGCCG78290.10062711682938082No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)