FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020257

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020257
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7386785
Sequences flagged as poor quality0
Sequence length0-101
%GC51

[FAIL]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[FAIL]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
NCGGGAACGTATTCACCGCGACATTCTGATTCGCGATTACTAGTAACTCC188730.2554968095050824No Hit
NCCCGAGGTAGCTTTTATCCGTTGAGCGATGGCCCTCCCACGAGGTACCA120520.16315623102608237No Hit
81350.11012910217367909No Hit
NTCCCGACTAACCCTCAGCGGACGAACCTTCCTGAGGAAACCTTAGGTTT73930.10008413673878419No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)