FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020279

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020279
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4319374
Sequences flagged as poor quality0
Sequence length0-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
115670.2677934348819991No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT110900.25675016796415406No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG47320.10955291206549839No Hit
GGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGC46510.10767764032473225No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA44130.10216758261729593No Hit

[OK]Adapter Content

Adapter graph