FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020281

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020281
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5164438
Sequences flagged as poor quality0
Sequence length0-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT153880.29796078489082456No Hit
138350.26788974908789687No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG64560.12500876184397994No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA62300.120632680651796No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC58910.11406855886352009No Hit
GGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGC54560.10564557072812182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)