FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020284

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020284
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4265088
Sequences flagged as poor quality0
Sequence length0-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
117650.2758442498724528No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG78520.18409936676570332No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG73080.17134464751958225No Hit
GTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGGCATCAATATGGTG46540.10911849884457248No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)