FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020285

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020285
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4775639
Sequences flagged as poor quality0
Sequence length0-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT133630.27981595761321154No Hit
130270.2727802499309517No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG56450.1182040769832058No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA54010.1130948130710885No Hit
CTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATC51930.10873937498207045No Hit
GGCAGAGACAGAGGCGGCGGCCCGGGGGATCCGGTACCCCCAAGGCACGC51030.10685481042432227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)