FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020298

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020298
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5070732
Sequences flagged as poor quality0
Sequence length0-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
217800.4295237847316719No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG171970.3391423565670597No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG89830.17715390992858623No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA62860.12396632281098666No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)