FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020306

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020306
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3934076
Sequences flagged as poor quality0
Sequence length0-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
160340.40756711359922887No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG131440.33410640770539257No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG70430.17902551958833535No Hit
GTTGACTATTCTCTACAAACCACAAAGACATTGGAACACTATACCTATTA52960.13461864997015818No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)