FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4234233
Sequences flagged as poor quality0
Sequence length0-101
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
648321.5311391697150345No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG82840.1956434612833068No Hit
GCCGTATCGTTCCGCCTGGGCGGGATTCTGACTTAGAGGCGTTCAGTCAT43080.10174215731633098No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT42520.1004196037393313No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)