FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020428

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020428
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3821007
Sequences flagged as poor quality0
Sequence length0-101
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
654261.7122711369018688No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG87250.22834294729111984No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG64820.16964114433708183No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG40980.10724921467037354No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)