FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020443

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020443
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3730663
Sequences flagged as poor quality0
Sequence length0-101
%GC55

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
104830.28099562999927896No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT46880.12566131006740625No Hit
GCGACGCTTTCCAAGGCACGGGCCCCTCTCTCGGGGCGAACCCATTCCAG39680.10636179145637116No Hit
CCTCATTTGGATGTGTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCT38930.10435142493438834No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)