FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020501

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020501
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4016957
Sequences flagged as poor quality0
Sequence length0-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
118710.2955222074819322No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT46040.11461412208295982No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT44780.11147741935002041No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT43730.10886350040590427No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG42230.10512933048573833No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)