FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020509

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020509
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4131063
Sequences flagged as poor quality0
Sequence length0-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
126860.30708803036893895No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT47290.11447416802890685No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT46440.11241658623942555No Hit
CCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATT45720.11067369342951197No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG43050.10421046592608246No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG41740.10103936928582305No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)