FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020521

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020521
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5007191
Sequences flagged as poor quality0
Sequence length0-101
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
436410.8715665130409445No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG73410.14660914672517986No Hit
GGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCC70100.13999865393590938No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT64640.12909433652520946No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)