FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020587

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020587
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4580439
Sequences flagged as poor quality0
Sequence length0-101
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
389140.849569222513388No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT111720.24390675216938812No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG54460.11889690049359898No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA52450.11450867482352674No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)