FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020602

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020602
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5498196
Sequences flagged as poor quality0
Sequence length0-101
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
206210.37505028922213757No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG130480.23731420269484754No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG117670.21401565167920533No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG63580.11563792924079098No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)