FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020604

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020604
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4558970
Sequences flagged as poor quality0
Sequence length0-101
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
175480.38491150413360914No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGTGGGAG102130.22401989923162471No Hit
GCGGTGGCGCGTGCCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCTGGAG90220.1978955772904845No Hit
GTTCTGGGCTGTAGTGCGCTATGCCGATCGGGTGTCCGCACTAAGTTCGG52710.11561822078232584No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)