FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020629

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020629
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences5114384
Sequences flagged as poor quality0
Sequence length0-101
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
182600.35703224474345296No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT61900.12103119359046954No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG58620.11461790901895516No Hit
GTCTGGAGTCTTGGAAGCTTGACTACCCTACGTTCTCCTACAAATGGACC53750.10509574564600546No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT53480.10456782283066739No Hit
CCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATATTG52230.10212373572262075No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)