FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008020671

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008020671
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4247702
Sequences flagged as poor quality0
Sequence length0-101
%GC54

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[FAIL]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
271480.6391220476389351No Hit
GCTCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGAT55950.13171827967216157No Hit
GCTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGG51890.122160170369767No Hit
GCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCG47560.11196642325662204No Hit
CCCCTCCTTAGGCAACCTGGTGGTCCCCCGCTCCCGGGAGGTCACCATAT45020.10598671940734072No Hit
CCAGGCTGGAGTGCAGTGGCTATTCACAGGCGCGATCCCACTACTGATCA42810.10078390621564319No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)