FastQCFastQC Report
Wed 31 May 2023
EGAF00008025318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008025318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36994930
Sequences flagged as poor quality0
Sequence length76
%GC46

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGTCAACGTGTAGATCT1311560.3545242550803583Illumina Single End PCR Primer 1 (97% over 37bp)
CTCCGTTTCCGACCTGGGCCGGTTCACCCCTCCTTAGGCAACCTGGTGGT575030.15543481228373726No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)