FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008025391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008025391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences74594668
Sequences flagged as poor quality0
Sequence length101
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCCACTATAATCTTGGATGCTCCCACTCTAGGTAAAGTTGGGTTGATCA1648720.2210238404707425No Hit
GTTCAGAGTCTTCCTGTCGTATTGGGGGTGGCGGATGATCTTGGCTGCAT940490.12608005708933515No Hit
CCTTGGTGTAGACTCCAGGCTTGTTCTTCTGGGCACAGCCATCACCCCAG817110.10954000090194113No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)