FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008025551

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008025551
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences52829563
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTCCAATATCTCGTAT1389380.2629929003955607TruSeq Adapter, Index 21 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTTCCAATATCGCGTAT592720.11219475731798123TruSeq Adapter, Index 21 (97% over 38bp)

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)