FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008025595

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008025595
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59808902
Sequences flagged as poor quality0
Sequence length101
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTTAAGATCTCGTAT2607090.4359033376001452TruSeq Adapter, Index 11 (97% over 37bp)
CTAGATTTTATGTATACGGGTTCTTCGAATGTGTGGTAGGGTGGGGGGCA792930.13257725413517873No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTTAAGATCGCGTAT771290.12895906365243087TruSeq Adapter, Index 11 (97% over 37bp)
CGGGGGAAGGCGCTTTGTGAAGTAGGCCTTATTTCTCTTGTCCTTTCGTA603840.10096155920066882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)