FastQCFastQC Report
Fri 2 Jun 2023
EGAF00008045664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008045664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences357903
Sequences flagged as poor quality0
Sequence length40-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGCT4350.12154131147266159No Hit
GTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACCTGTCTCTTATAC3840.10729164047241851No Hit
GTCTAACGCCTACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACT3770.1053358032763067No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACCTGTCTCTTATAC3590.10030650762916209No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)