FastQCFastQC Report
Wed 31 May 2023
EGAF00008045716

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008045716
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2677534
Sequences flagged as poor quality0
Sequence length37-51
%GC55

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC42120.1573089267960743No Hit
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAATC39350.14696358664353096No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTAT32770.12238873530644241No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATC27690.10341605372704885No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)