FastQCFastQC Report
Wed 8 May 2024
EGAF00008045751

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008045751
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485104
Total Bases24.5 Mbp
Sequences flagged as poor quality0
Sequence length40-51
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC8720.1797552689732511No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA7030.14491737854150863No Hit
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAAT6120.12615851446287807No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)