FastQCFastQC Report
Fri 2 Jun 2023
EGAF00008045797

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008045797
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences381077
Sequences flagged as poor quality0
Sequence length40-51
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4800.12595879572894716No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGCT4550.11939844178473118No Hit
GTCTAACGCCTACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACT4350.11415015862935836No Hit
TACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACTATGCGCCTAGT4110.10785221884291102No Hit
GTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACCTGTCTCTTATAC4040.10601531973853053No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACCTGTCTCTTATAC4000.10496566310745598No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGG3890.10207910737200093No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)