FastQCFastQC Report
Thu 1 Jun 2023
EGAF00008045803

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008045803
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences767442
Sequences flagged as poor quality0
Sequence length40-51
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC9580.12483028033388843No Hit
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAATC9470.1233969472611611No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8940.11649088791074766No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)