FastQCFastQC Report
Wed 31 May 2023
EGAF00008046583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008046583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences620403
Sequences flagged as poor quality0
Sequence length40-51
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGCT9080.146356481190452No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6970.11234632972438882No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT6580.10606009319748615No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATATG6270.10106334108635838No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)