FastQCFastQC Report
Fri 2 Jun 2023
EGAF00008046683

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008046683
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences172165
Sequences flagged as poor quality0
Sequence length41-51
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2600.15101791885691052No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT2050.11907182063717946No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1930.11210176284378358No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGCT1770.10280835245258908No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)