FastQCFastQC Report
Wed 31 May 2023
EGAF00008046728

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008046728
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences414295
Sequences flagged as poor quality0
Sequence length41-51
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGCT6710.16196188706115208No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC5230.12623854982560737No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATATG4500.10861825510807516No Hit
GTCTAACGCCTACCAGTACTGATTGCCGAGCAAATCTGTGAATGGCGACT4160.10041154249990948No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)