FastQCFastQC Report
Wed 31 May 2023
EGAF00008046776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008046776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences976407
Sequences flagged as poor quality0
Sequence length40-51
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT33410.34217288487280406No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT26400.27037905299736686No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25830.2645413234440146No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT12790.13099045787258798No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)