FastQCFastQC Report
Thu 1 Jun 2023
EGAF00008046918

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008046918
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences590596
Sequences flagged as poor quality0
Sequence length40-51
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21950.37165846026725546No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17720.300035895942404No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT17050.28869142357889316No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8430.1427371672005906No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)