FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008054862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008054862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences29650458
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATT853450.28783703779550385No Hit
GGGCTGTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGCGG375490.12663885326830362No Hit
GGCGTAGGTTTGGTCTAGGGTGTAGCCTGAGAATAGGGGAAATCAGTGAA343300.11578235992172532No Hit
GGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTACTC332870.11226470768174981No Hit
GGCGTAATGGAATGCTTGAAGGCTGCTCCGTGATGTCGGTCGGAGCTTCC330920.11160704499067098No Hit
GGCGGGTTTTAGGGGCTCTTTGGTGAAGAGTTTTATGGCGTCAGCGAAGG321720.10850422614045287No Hit
GCCCGCTCTCCCAGTCATCACAGTCTGGTTTCTTGATATCCTGAAGGAAG313780.10582635856754725No Hit
GCCTGGATGGTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCA303070.10221427271039117No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)