FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008054883

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008054883
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences10213473
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATTTTGGCGTAGGTTTGGTCTAGGGTGT293440.2873067760594266No Hit
GGCGGATGAAGCAGATAGTGAGGAAAGTTGAGCCAATAATGACGTGAAGTCCGTGGAAGCCTGTGGCTACAAAAA137500.13462609633373487No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN128870.12617647297838844No Hit
GGGGGAAGTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTTCAGTACCATTGGTGGCCA105710.10350054286137535No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)