FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008054892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008054892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37056781
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTCCAAGACCAGGCTTCTCACCCTCTAGGAGGGATAAGGCCCCCCGC1483400.40030460282019636No Hit
GGGACCTATCTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATGTT1156900.31219657206598705No Hit
CTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATGTTGTGGTTAGC1055810.28491681455008194No Hit
CCTATCTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATGTTGTGG989250.2669551896588104No Hit
CCTGGCTGGAGGGCAGTGAGAAAATGTTGTGGTTAGCGGAAATGGCTTGG803160.216737659971059No Hit
GTGGGACCTATCTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATG717410.19359749569181414No Hit
CTATCTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATGTTGTGGT699180.1886780182013111No Hit
AGAAAATGTTGTGGTTAGCGGAAATGGCTTGGGATGGCCTGCCGTAGACG611040.16489289773982257No Hit
GAAAATGTTGTGGTTAGCGGAAATGGCTTGGGATGGCCTGCCGTAGACGG566520.15287890224463913No Hit
CCTCTTCCAAGACCAGGCTTCTCACCCTCTAGGAGGGATAAGGCCCCCCG559180.1508981581535644No Hit
GACCTATCTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATGTTGT512500.13830127338907283No Hit
GTTGTGGTTAGCGGAAATGGCTTGGGATGGCCTGCCGTAGACGGTGAGAG502630.13563779325570668No Hit
CGGAAATGGCTTGGGATGGCCTGCCGTAGACGGTGAGAGCCCGGTACGTG437710.11811873243928014No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)