FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008054903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008054903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15316733
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAGCCATCCATTCCCAATCTTTTCAGAGTTCTGGCCAACTCACACCT1200380.7837049846073573No Hit
CCTGTAGCCATCCATTCCCAATCTTTTCAGAGTTCTGGCCAACTCACACC1110800.725219927774415No Hit
CTGGGTTATTTCTTTGATAAGAACTGAATGTGGCCGGGCGCAGTGGCTCA1104850.7213352873618676No Hit
CTCAGATTTAATCATAATACATGAATTAAATTAATCAAATTAAGGAACAG839220.5479105759694316No Hit
CTCCTGCTTCTGTAAAAATATTATTTGTTTGAAGGGGAAATAATGGTAGT792300.5172774115733427No Hit
CCCCTGTAGCCATCCATTCCCAATCTTTTCAGAGTTCTGGCCAACTCACA509080.3323685279360814No Hit
GTCTGGGTTATTTCTTTGATAAGAACTGAATGTGGCCGGGCGCAGTGGCT504420.3293261036802039No Hit
CCCTGTAGCCATCCATTCCCAATCTTTTCAGAGTTCTGGCCAACTCACAC471850.3080617779261413No Hit
GCTCCTGCTTCTGTAAAAATATTATTTGTTTGAAGGGGAAATAATGGTAG466690.3046929132994614No Hit
CTGTAGGCTTAATATAAAATAACCACATTAGTGAACATTATATCTCTTAG423110.276240370580332No Hit
GCCGGGCGCAGTGGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCGAG419510.27388999991055535No Hit
GTAGGCTTAATATAAAATAACCACATTAGTGAACATTATATCTCTTAGAA351550.22952022471110517No Hit
TCCTGCTTCTGTAAAAATATTATTTGTTTGAAGGGGAAATAATGGTAGTG326730.21331572470447846No Hit
GTTATTTCTTTGATAAGAACTGAATGTGGCCGGGCGCAGTGGCTCACGCC302430.19745072268348612No Hit
CCTGCTTCTGTAAAAATATTATTTGTTTGAAGGGGAAATAATGGTAGTGT295910.19319394024822395No Hit
CTCCAGCATTGTAGTTTGTAGCTCGTGTGTTGTAACCACTCTCCCATTTG269110.17569673637322006No Hit
GGGTGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGA264020.17237357339845255No Hit
GTGGATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACACGGTGAAA257170.16790134031846085No Hit
GCTTAATATAAAATAACCACATTAGTGAACATTATATCTCTTAGAAGAAA236860.15464133245647096No Hit
GTAGCCATCCATTCCCAATCTTTTCAGAGTTCTGGCCAACTCACACCTTT224460.14654561126057367No Hit
GGTTATTTCTTTGATAAGAACTGAATGTGGCCGGGCGCAGTGGCTCACGC219490.14330079397479867No Hit
CCTCTTTGCACAAGCTACAGCATCAGCGATGTTATCTTGCAGCAAAGCAC206030.13451301919280045No Hit
CTAAGATCTATTTAAGATAACCTTTTCTTATATTTTTTACTTAATATTGG203120.132613136234731No Hit
CTCCTTTAAAAATTTCATATTGCCCAACAAAAAGTGGTTATTTTTACTGT173550.11330745270548229No Hit
CTTTGCACAAGCTACAGCATCAGCGATGTTATCTTGCAGCAAAGCACTGC172510.11262845673421348No Hit
TGTAGCCATCCATTCCCAATCTTTTCAGAGTTCTGGCCAACTCACACCTT166210.10851530806210437No Hit
CCATGCTCTAATGCCTTGTGGATCACGGACAACCCTCTTTGCACAAGCTA158230.10330531974409947No Hit
TGTAGGCTTAATATAAAATAACCACATTAGTGAACATTATATCTCTTAGA153810.10041958686620706No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)