FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008054904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008054904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences15316733
Sequences flagged as poor quality0
Sequence length101
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTGACCTAGCAGTCAACATGAAGGCTCTCATTGTTCTGGGGCTTGTCC1219920.7964622742983115No Hit
CTAGCAGTCAACATGAAGGCTCTCATTGTTCTGGGGCTTGTCCTCCTTTC900000.5875926674441606No Hit
CTGACCTAGCAGTCAACATGAAGGCTCTCATTGTTCTGGGGCTTGTCCTC461260.30114777087254835No Hit
GTCAACATGAAGGCTCTCATTGTTCTGGGGCTTGTCCTCCTTTCTGTTAC441160.2880248679662954No Hit
CTCTCATTGTTCTGGGGCTTGTCCTCCTTTCTGTTACGGTCCAGGGCAAG351750.22965080085942607No Hit
CGCCATTCTCCTGCCTCAGCCTCCCGAGTAGCTGGGATTACGGGCGCCCG302650.1975943564466391No Hit
GTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGATCCA288960.18865641909407183No Hit
CAGGGTTTCACCGTGTTAGCCAGGATGGTCTCGATCTCCTGACCTTGTGA287090.18743553210727118No Hit
GGCTCTCATTGTTCTGGGGCTTGTCCTCCTTTCTGTTACGGTCCAGGGCA200350.1308046565804862No Hit
GTGTAACTCCAGAATTTTCCTTCTTCAGCTCATTTTGTCTCTCTCACATT198650.12969475931975835No Hit
TAGCAGTCAACATGAAGGCTCTCATTGTTCTGGGGCTTGTCCTCCTTTCT175090.11431288904755342No Hit
CAGTCAACATGAAGGCTCTCATTGTTCTGGGGCTTGTCCTCCTTTCTGTT153370.10013231933990101No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)