FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008054949

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008054949
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37426283
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAAGTATTCAGGCTTACCGGGTGGTCCCGGCAGATTCACAGCAGAT1741990.46544563348703366No Hit
CCACGGGCCCGCTGCTACTCGGGAACACCATCAAGACAGACGTCGGGTTT1508450.40304563506880986No Hit
CACGGGCCCGCTGCTACTCGGGAACACCATCAAGACAGACGTCGGGTTTT813400.21733389874703826No Hit
GGGAAGTATTCAGGCTTACCGGGTGGTCCCGGCAGATTCACAGCAGATTC759670.20297767747868523No Hit
AGCAGATTCCACGGGCCCGCTGCTACTCGGGAACACCATCAAGACAGACG575910.15387849228842737No Hit
CAGCAGATTCCACGGGCCCGCTGCTACTCGGGAACACCATCAAGACAGAC508110.13576288086102486No Hit
GCCGGTTAGTGCCAGTTCCCTGCACCTATTACTAGGCTTCCAGGTCTGGT385790.1030799665571919No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)