FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008054950

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008054950
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37426283
Sequences flagged as poor quality0
Sequence length151
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTCCAAGACCAGGCTTCTCACCCTCTAGGAGGGATAAGGCCCCCCGC1084960.2898925335438734No Hit
GGGACCTATCTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATGTT777040.2076188009372985No Hit
CTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATGTTGTGGTTAGC720450.19249841080932348No Hit
CCTATCTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATGTTGTGG674040.18009803431454843No Hit
CCTGGCTGGAGGGCAGTGAGAAAATGTTGTGGTTAGCGGAAATGGCTTGG556280.14863351511556733No Hit
GTGGGACCTATCTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATG482720.12897887829256247No Hit
CTATCTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATGTTGTGGT476660.12735969532427252No Hit
AGAAAATGTTGTGGTTAGCGGAAATGGCTTGGGATGGCCTGCCGTAGACG430270.1149646626676766No Hit
CCTCTTCCAAGACCAGGCTTCTCACCCTCTAGGAGGGATAAGGCCCCCCG406550.10862687058717532No Hit
GAAAATGTTGTGGTTAGCGGAAATGGCTTGGGATGGCCTGCCGTAGACGG398790.10655346137365553No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)