FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008054968

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008054968
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40780957
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGGAAGTATTCAGGCTTACCGGGTGGTCCCGGCAGATTCACAGCAGAT1253480.3073689516408357No Hit
CCACGGGCCCGCTGCTACTCGGGAACACCATCAAGACAGACGTCGGGTTT1094000.2682624637769045No Hit
GTCCGGATTCAAAGGCCCAGGCTTGAGCTGGGTAGCACCATTTCTTTCAT589650.14458954457591566No Hit
CACGGGCCCGCTGCTACTCGGGAACACCATCAAGACAGACGTCGGGTTTT581080.14248807353883333No Hit
GGGAAGTATTCAGGCTTACCGGGTGGTCCCGGCAGATTCACAGCAGATTC547410.13423176900924616No Hit
GGCGTAATGGAATGCTTGAAGGCTGCTCCGTGATGTCGGTCGGAGCTTCC547100.13415575313742636No Hit
GTGGGAAGAAAGTTAGATTTACGCCGATGAATATGATAGTGAAATGGATT484750.11886675440206075No Hit
GTGGGGACGGCGTCATCCCGCTGGAGGAGCTCAGCTCTGGGATGATGTGG418250.102560123834269No Hit
AGCAGATTCCACGGGCCCGCTGCTACTCGGGAACACCATCAAGACAGACG415710.10193728411032629No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)