FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008054969

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008054969
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40780957
Sequences flagged as poor quality0
Sequence length151
%GC50

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCTTCCAAGACCAGGCTTCTCACCCTCTAGGAGGGATAAGGCCCCCCGC728570.1786544636507672No Hit
GGGACCTATCTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATGTT551140.13514641159598093No Hit
CTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATGTTGTGGTTAGC528510.12959725295313693No Hit
CCTATCTTTCCGGCTCTACCTGGCTGGAGGGCAGTGAGAAAATGTTGTGG477600.11711348510041095No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)