FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060160

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060160
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3147362
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGGTTCTCCGGGAAGCTCCCCTTCAGTGGCGGGTACACCTTCAGGGGGTCAGCATTCTGGAGCAGGTGCATC49270.15654379763115905No Hit
CTCCTCAATCCACTTGATCCCAACTCATCTCTCATTTATTTCGGCTTCTT47250.15012572433676202No Hit
CTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCT47140.14977622529597803No Hit
CCCTGACTTTCTGGAAATAAAATGTGTAATTACCTTTTACTCTGATCATA46340.14723441409027624No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT44190.14040329647495267No Hit
CTCAACACTCAGCCTTTATCACTCAGCTGGATTTTTTCCTTCAACAATCA43700.13884643711146033No Hit
CTTCTGTTAACAATTTGCAGGCAAATTAATGGCCTTTTCTAACATAGTTC41010.13029959693228807No Hit
CCATGGTGTTCTTAAGGTGTCTCAGGTTCTCCGGGAAGCTCCCCTTCAGT40820.1296959167709339No Hit
CCCTAACATGCAATACTGCAGATGCAAGTTAAACTTATCTGTTAACAGCTGCCTGCTGTTTTCTGCTCCCAGATG39540.12562901884181102No Hit
CCTATCTTCACCACGAACTGCTGCTTGCTCGCTTGCTCCTCAGTCCTAGC36090.11466745801722204No Hit
CCTGACTTTCTGGAAATAAAATGTGTAATTACCTTTTACTCTGATCATAA35670.11333300713422859No Hit
CTCCATGGTGTTCTTAAGGTGTCTCAGGTTCTCCGGGAAGCTCCCCTTCAGTGGCGGGTACACCTTCAGGGGGTC35640.11323768921401478No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)