FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060178

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060178
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3194916
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTCAGGTTCTCCGGGAAGCTCCCCTTCAGTGGCGGGTACACCTTCAGGGGGTCAGCATTCTGGAGCAGGTGCATC106550.333498595894227No Hit
CTCCATGGTGTTCTTAAGGTGTCTCAGGTTCTCCGGGAAGCTCCCCTTCAGTGGCGGGTACACCTTCAGGGGGTC67210.21036546813750345No Hit
CCATGGTGTTCTTAAGGTGTCTCAGGTTCTCCGGGAAGCTCCCCTTCAGT59990.18776706492439865No Hit
GTCTCAGGTTCTCCGGGAAGCTCCCCTTCAGTGGCGGGTACACCTTCAGG55740.17446468076155994No Hit
CCTCTGTCATGTTGCCATACTTGGTGGCATTCTGCATGGGCCCCTGGGGC43780.1370302067409597No Hit
CTCCAGTTCCAGTGACTCTTTCGGTGGAGCGTCAGTGGGCTTTTGCTCCA43720.13684240837630784No Hit
GTCAAAACGAATTAGTTCATTAATGGCTTCCAGCTTGGCTGATGACGTCC37840.11843816864042747No Hit
GTCTCCATGGTGTTCTTAAGGTGTCTCAGGTTCTCCGGGAAGCTCCCCTT33030.10338299974083827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)