FastQCFastQC Report
Wed 8 May 2024
EGAF00008060186

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060186
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3344763
Total Bases252.8 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCT46170.1380366860073494No Hit
CTCCTCAATCCACTTGATCCCAACTCATCTCTCATTTATTTCGGCTTCTT44140.1319674966507343No Hit
CCTATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGT38300.11450736569377261No Hit
CTCAGGTTCTCCGGGAAGCTCCCCTTCAGTGGCGGGTACACCTTCAGGGG37150.11106915497450791No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT36960.11050110276871634No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)