FastQCFastQC Report
Wed 8 May 2024
EGAF00008060194

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060194
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4128657
Total Bases312 Mbp
Sequences flagged as poor quality0
Sequence length35-76
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCT85330.20667737717131743No Hit
CTCCTCAATCCACTTGATCCCAACTCATCTCTCATTTATTTCGGCTTCTT60080.14551947521918143No Hit
CCTATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGT50930.12335730480880344No Hit
CCCAGCTTTTCTTTATCTCCAATCTGATTCTTTAGAGAATAGGCATAGCT49430.11972416211857755No Hit
CCTGCATGTAAGAATTAAGACCAAGGGAGGGGAGAGAGAAACCCACACAT47380.11475886710860213No Hit
CTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGAC41690.1009771458370119No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)