FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060198

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060198
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2914458
Sequences flagged as poor quality0
Sequence length35-76
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGA71560.24553450418568395No Hit
CTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCT68370.23458907282245964No Hit
CCCTATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAG65320.22412400521812287No Hit
CCCCATTATATTAGAAAATAAATAAAAGGTTACCATAAGTAAGTTCCAGA64890.22264860224439675No Hit
CCCCCATTATATTAGAAAATAAATAAAAGGTTACCATAAGTAAGTTCCAG61960.21259527500482078No Hit
CCCCTTCTAGCTTCAAGTATTCTTCTAAATTGGTTCTGGTCTACGTAAAC61560.21122280712228483No Hit
CCTATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGT60200.20655641632166252No Hit
CCTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAATT52860.1813716306771276No Hit
CCCCAGTTCAATACTTTCCTTCCCCAAAAGCTCTATACTTTGAAGGAAAA52740.1809598903123668No Hit
CCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTC45660.15666720879148027No Hit
TCCCTATCTTCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCA45030.15450557187648611No Hit
CTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGAC42050.1442806861515932No Hit
GCTCGCTTGCTCCTCAGTCCTAGCTTCATCAAACACTGGTTCCTGGAATC40610.13933980177446373No Hit
CCTGCCTTAAAGTTACATTCGTTCTTCCGCTCAAATCCTGATCTGGTCCA39400.13518808642979244No Hit
CCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTT39360.13505083964153883No Hit
GTCCCATAACTGATCTGACTTTGTATGTAAATACAGAAAAAGCTTGTTCA36090.12383091470180735No Hit
GCCCTTAGCTTTTTGTTTCCTAGCTTGTCTTTTTTCTTCTGCTTCCTACT34010.11669408171262033No Hit
CCTATCTTCACCACGAACTGCTGCTTGCTCGCTTGCTCCTCAGTCCTAGC30570.10489085792281104No Hit
CCCCATATAAATCCCTTTACACCTCAGTACGAAACTCCCCCATTATATTAGAAAATAAATAAAAGGTTACCATA29870.1024890391283731No Hit
CTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAATTG29810.1022831689459927No Hit
CTCCCCTTTAATAAAACTTTTAAGAAGTCACATTATTGGAAAACTTAACT29260.10039602560750575No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)