FastQCFastQC Report
Sun 11 Jun 2023
EGAF00008060200

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00008060200
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3013226
Sequences flagged as poor quality0
Sequence length35-76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[WARN]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCT203910.6767165821614443No Hit
CCCCATTATATTAGAAAATAAATAAAAGGTTACCATAAGTAAGTTCCAGA107490.3567273082072171No Hit
CTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGAC105710.3508200181466641No Hit
GCTCCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGA62870.20864681241964592No Hit
CTCCTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAA55020.18259499951215077No Hit
CTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCAAATTG48160.1598287018630531No Hit
CTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTTC46600.15465152630436615No Hit
CTCGCTTTCCCTGTGGCCTTGGCACACTGGCATGCTGGTCTAGGATCCTC46500.1543196560762452No Hit
CCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTCTTTT42310.14041429351797707No Hit
CCTATCTTCACCACGAACTGCTGCTTGCTCGCTTGCTCCTCAGTCCTAGC36420.1208671370816527No Hit
CCATTATATTAGAAAATAAATAAAAGGTTACCATAAGTAAGTTCCAGAAA35860.11900866380417532No Hit
CCTTCCTTCTTCCTAGCTTCCTTCACCAAATCGCACTGGCTCCTGGACTC34280.1137651141998642No Hit
GCTCGCTTGCTCCTCAGTCCTAGCTTCATCAAACACTGGTTCCTGGAATC32480.10779145009368696No Hit
GGGTGAAGGGTCTGTGCTAGATCAAAAGGCACGGGGTGGCGATGTGGCAG32200.10686221345494828No Hit
GCCTCCTCCGTGTGGTTGCCAAGCCAAGCCGCCTGCTACCTTCATCACCA31230.10364307224217499No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)